PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41177.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 318aa    MW: 36051.9 Da    PI: 4.8805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41177.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
       KHN41177.1 14 KGTWTLEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                     799*******************************************97 PP

2Myb_DNA-binding58.61.4e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e +++ +k+lG++ W+tIa++++ gRt++++k++w++ 
       KHN41177.1  67 RGNFTQQEEEFIIRMHKKLGNR-WSTIAAELP-GRTDNEIKNHWHTT 111
                      89********************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-22664IPR009057Homeodomain-like
PROSITE profilePS5129415.131961IPR017930Myb domain
SuperFamilySSF466892.77E-2911108IPR009057Homeodomain-like
SMARTSM007177.2E-101363IPR001005SANT/Myb domain
PfamPF002495.9E-131461IPR001005SANT/Myb domain
CDDcd001679.25E-91661No hitNo description
PROSITE profilePS5129427.36462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2665115IPR009057Homeodomain-like
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002494.5E-1667111IPR001005SANT/Myb domain
CDDcd001671.70E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVRTPSCDKS GMRKGTWTLE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPDVKRGNF TQQEEEFIIR MHKKLGNRWS TIAAELPGRT DNEIKNHWHT TLKKRSQQNT  120
LTKEEARASK SKDKVLPNKG VTVTLPATSS QFSDNSSLSP ASSTSSEFSN ITSDPSTAAS  180
MENLVFEDDD EFGFLDSYID PMNNESFWKE LTLDDISFNN VPIVSEDTNG CFQSTSSSNS  240
NTLDSLHKST SESIVVDNDF GGFFDAYAEA TVDNFWTQPY VAGMSSNVPT ELLAPSVAES  300
EYFTPIYDDL WGQTHLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-30141154104C-Myb DNA-Binding Domain
1msf_C6e-30141154104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526303.10.0PREDICTED: myb-related protein Myb4
TrEMBLA0A0B2SAB20.0A0A0B2SAB2_GLYSO; Myb-related protein Myb4
STRINGGLYMA06G45540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-57myb domain protein 14
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]